Install guide #

Install via pip #

Installation needs distribution of biopython (original) we modified.

pip install git+https://github.com/flat35hd99/biopython
pip install symmetryshift

Verify your installation #

Check if your installation succeed.

# Argument is pdb id.
symmetry 1KZU 

You will see success and you can find out.pdb file and some directories.

.
├── kz
│   └── pdb1kzu.ent
├── obsolete
└── out.pdb

out.pdb is a generated biological assembly PDB file and kz/pdb1kzu.ent is original PDB file. You can check structure using protein viewer like VMD and PyMOL.

kz/pdb1kzu.ent looks like:

and out.pdb looks like: